Modules

Top level module

• Run
  • Runner

Customising the BO loop

Regressor

• Gaussian Process Regressor
  • The GPR model
  • The infinities classifier
• SVM
  • SVM
• Kernels
  • Hyperparameter
  • Kernel
  • RBF
  • Matern
  • RationalQuadratic
  • ExpSineSquared
  • ConstantKernel
  • WhiteKernel
  • KernelOperator
  • Exponentiation
  • Sum
  • Product
  • DotProduct

Acquisition

• Gaussian Process Acquisition
  • BatchOptimizer acquisition engine
  • NORA acquisition engine
• Acquisition Functions
  • Base Class
  • Inbuilt Acquisition Functions
  • Additional things
• Proposal
  • check_in_bounds()
  • Proposer
  • InitialPointProposer
  • ReferenceProposer
  • PriorProposer
  • UniformProposer
  • PartialProposer
  • MeanCovProposer
  • CentroidsProposer
  • MeanAutoCovProposer
  • SmallChainProposer

Other

• Preprocessing
  • DummyPreprocessor
  • Pipeline_X
  • Whitening
  • Normalize_bounds
  • Pipeline_y
  • Normalize_y
  • NormalizeChi2_y
• Convergence
  • Convergence policy

Tools

• Plots
  • simple_latex_sci_notation()
  • param_samples_for_slices()
  • prepare_slices_func()
  • plot_slices_func()
  • plot_slices()
  • plot_slices_reference()
  • plot_corner_getdist()
  • getdist_add_training()
  • plot_convergence()
  • plot_trace()
  • plot_distance_distribution()
• MPI-tools
  • get_random_generator()
  • bcast()
  • gather()
  • allgather()
  • split_number_for_parallel_processes()
  • step_split()
  • merge_step_split()
  • multi_gather_array()
  • sync_processes()
  • share_attr()
  • compute_y_parallel()
• MC-tools
  • get_cobaya_log_level()
  • cobaya_generate_gp_model_input()
  • mcmc_info_from_run()
  • polychord_info_from_run()
  • mc_sample_from_gp_cobaya()
  • mc_sample_from_gp_ns()
  • process_gdsamples()
  • samples_dict_to_getdist()
• Tools
  • kl_norm()
  • kl_mc()
  • is_valid_covmat()
  • gaussian_distance()
  • nstd_of_1d_nstd()
  • delta_logp_of_1d_nstd()
  • credibility_of_nstd()
  • volume_sphere()
  • check_random_state()
  • generic_params_names()
  • NumpyErrorHandling
  • get_Xnumber()
  • check_candidates()
  • is_in_bounds()
  • check_and_return_bounds()
  • shrink_bounds()
  • wrap_likelihood()
  • remove_0_weight_samples()
  • mean_covmat_from_samples()
  • mean_covmat_from_evals()
• IO-tools
  • create_path()
  • check_checkpoint()
  • read_checkpoint()
  • save_checkpoint()
  • ensure_gpr()
• Progress
  • Progress
  • Timer
  • TimerCounter